There’s something undeniably comforting about a warm muffin fresh from the oven—especially when it’s packed with wholesome ingredients and cozy flavors. These Whole Wheat Apple Cinnamon Muffins are a perfect breakfast or snack for chilly mornings, school lunchboxes, or a grab-and-go treat that feels both indulgent and nourishing.
Made with 100% whole wheat flour, these muffins are hearty yet tender, with a rich nutty flavor that pairs beautifully with the natural sweetness of apples and the warmth of ground cinnamon. They’re lightly sweetened, so they don’t feel like dessert, but they still offer just enough sweetness to satisfy.
These muffins are a healthier alternative to store-bought pastries, and they’re made with simple, clean ingredients. No refined flour, no butter—just ingredients you likely already have in your pantry. Plus, they’re naturally dairy-free when made with plant-based milk.
Apple and cinnamon are a match made in heaven, especially in baked goods. The apples provide little juicy bursts of freshness, while the cinnamon offers a grounding warmth that makes these muffins taste like fall in every bite.
Grated apple ensures the muffins stay moist, while also infusing them with real fruit flavor. Chunks of apple are welcome too, giving the muffins more texture and variety with each bite.
Whether you’re meal prepping for the week or just want a cozy baking project for the weekend, this recipe comes together quickly and easily. No mixer needed—just two bowls, a whisk, and a muffin tin.
These muffins are kid-friendly, freezer-friendly, and customizable. You can add chopped nuts for crunch, raisins for chewiness, or a sprinkle of oats on top for a rustic look.
They also happen to smell incredible while baking. The aroma of cinnamon and apple wafting through your kitchen is pure comfort and nostalgia.
Each muffin is filling and satisfying, thanks to the fiber from the whole wheat flour and the fruit content. It’s the kind of snack that keeps you going without a sugar crash.
They’re great warm, but also delicious at room temperature. Try them with a bit of almond butter or a drizzle of honey if you want to make them extra special.
This recipe is easy enough for beginners and reliable enough to become a staple. It’s the kind of muffin you’ll want to make on repeat.
If you’re looking for a wholesome muffin that doesn’t taste overly “healthy,” this is the one. It’s got all the charm of a classic apple muffin with none of the guilt.
The cinnamon sugar topping gives them a beautiful golden finish and a tiny crunch that makes each bite more exciting.
Once you taste these muffins, you’ll understand why they’re a favorite. Soft, fragrant, and loaded with apple goodness, they’re everything a cozy muffin should be.
These muffins are a perfect example of how a few basic ingredients can come together to make something truly delicious and comforting.
Servings: 12 muffins
Time:
Prep Time: 15 minutes
Cook Time: 20–22 minutes
Total Time: 35–37 minutes
Ingredients:
- 1 3/4 cups whole wheat flour
- 1/2 cup brown sugar, packed
- 1 1/2 teaspoons ground cinnamon
- 1/2 teaspoon baking soda
- 1/2 teaspoon baking powder
- 1/4 teaspoon salt
- 1/3 cup vegetable oil (or melted coconut oil)
- 2 large eggs
- 1/2 cup unsweetened applesauce
- 1/4 cup milk (dairy or plant-based)
- 1 1/2 cups grated apple (about 2 medium apples)
Optional Topping:
- 1 tablespoon sugar
- 1/4 teaspoon cinnamon
Instructions:
- Preheat oven to 375°F (190°C). Line a muffin tin with paper liners or lightly grease it.
- In a large bowl, whisk together whole wheat flour, brown sugar, cinnamon, baking soda, baking powder, and salt.
- In another bowl, whisk together oil, eggs, applesauce, and milk until well combined.
- Stir wet ingredients into dry ingredients just until combined. Do not overmix.
- Fold in grated apple.
- Divide the batter evenly among the 12 muffin cups.
- In a small bowl, mix the optional topping ingredients and sprinkle over each muffin.
- Bake for 20–22 minutes, or until a toothpick inserted into the center comes out clean.
- Allow to cool in the pan for 5 minutes before transferring to a wire rack.
Tips:
- Use sweet or tart apples depending on your flavor preference—Honeycrisp, Fuji, or Granny Smith all work well.
- You can mix grated and finely chopped apples for added texture.
- Add 1/4 cup chopped walnuts or pecans for a nutty crunch.
- Muffins can be stored at room temperature for up to 3 days or frozen for longer storage.
- Warm slightly before serving for best flavor and texture.
Why You’ll Love This Recipe:
These Whole Wheat Apple Cinnamon Muffins are everything you want in a wholesome baked good: moist, flavorful, and easy to make. They’re perfect for busy mornings, cozy snacks, or a healthier sweet treat. Each bite is warm, gently spiced, and full of apple goodness.
Summary: Whole Wheat Apple Cinnamon Muffins are a nutritious and comforting treat made with whole wheat flour, grated apples, and warm spices. Moist and gently sweetened, they make a perfect snack or breakfast on-the-go.
